PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do000184.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 283aa    MW: 30518.1 Da    PI: 6.5326
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do000184.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.9e-1195151155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++ k++g+++A+++d  s+  g krk  + g++ t+e+Aa+a++ a++k++g
  Do000184.1  95 SRFHGVTRLKWSGKYEAHLWDnTSQvEGrKRKGKH-GSYVTEEQAARAHDLAALKYWG 151
                 789******************55558777778888.999999*************987 PP

2AP239.31.7e-12196242955
         AP2   9 dkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++k+g+W A+I    e +    k ++lg+f t+eeAa+a++ a+ +l+g
  Do000184.1 196 RRKDGKWQARIGRIGEsR--DtKDIYLGTFETEEEAAEAYDIAAIELRG 242
                 5679******99953323..36*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-1195163No hitNo description
SuperFamilySSF541713.33E-1195162IPR016177DNA-binding domain
PfamPF008477.7E-895151IPR001471AP2/ERF domain
PROSITE profilePS5103215.38296161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-1096161IPR001471AP2/ERF domain
SMARTSM003805.3E-1396167IPR001471AP2/ERF domain
PRINTSPR003679.3E-597108IPR001471AP2/ERF domain
PROSITE profilePS5103217.306184250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-16195250IPR001471AP2/ERF domain
PfamPF008471.2E-7196242IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-14196252IPR016177DNA-binding domain
SMARTSM003801.7E-19196256IPR001471AP2/ERF domain
PRINTSPR003679.3E-5232252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MATVQPQSPA GPTPPPPQEE RHDDAPDPPA ASSGEPPAAA GPGAGGGEIA ALDKQLAVGG  60
GGEERKPDGG ASAAAGGGGK LVAEAMRKYA SPRSSRFHGV TRLKWSGKYE AHLWDNTSQV  120
EGRKRKGKHG SYVTEEQAAR AHDLAALKYW GIGPNTKLNF NISDYEKEIE IMKTMSQDEF  180
VAYIRRSVAK QLFLKRRKDG KWQARIGRIG ESRDTKDIYL GTFETEEEAA EAYDIAAIEL  240
RGVHAVTNFD ISNYCEDGLR KLEGPSEVAK LEGPSEVMKL AGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977550.11e-160PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ5YGP72e-57PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLK3Y9551e-160K3Y955_SETIT; Uncharacterized protein
STRINGSi010747m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-46AP2 family protein